The exit status of the task that caused the workflow execution to fail was: null.
The full error message was:
Error executing process > 'NFCORE_SEQINSPECTOR:SEQINSPECTOR:FASTQC (SAMPLE_PAIRED_END_2_2)'
Caused by:
Process requirement exceeds available memory -- req: 36 GB; avail: 16 GB
Command executed:
printf "%s %s\n" Bpacificus-ATCC10987-rep2-sWGS-MiSeqi100-241111_S2_L001_R1_001.fastq.gz SAMPLE_PAIRED_END_2_2_1.gz Bpacificus-ATCC10987-rep2-sWGS-MiSeqi100-241111_S2_L001_R2_001.fastq.gz SAMPLE_PAIRED_END_2_2_2.gz | while read old_name new_name; do
[ -f "${new_name}" ] || ln -s $old_name $new_name
done
fastqc \
--quiet \
--threads 6 \
--memory 6144.0 \
SAMPLE_PAIRED_END_2_2_1.gz SAMPLE_PAIRED_END_2_2_2.gz
cat <<-END_VERSIONS > versions.yml
"NFCORE_SEQINSPECTOR:SEQINSPECTOR:FASTQC":
fastqc: $( fastqc --version | sed '/FastQC v/!d; s/.*v//' )
END_VERSIONS
Command exit status:
-
Command output:
(empty)
Work dir:
/Users/agrimabhatt/seqinspector/work/05/ee064086b5f37281337d282530be7e
Container:
quay.io/biocontainers/fastqc:0.12.1--hdfd78af_0
Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line
nextflow run main.nf -profile test,docker --input /Users/agrimabhatt/pipeline/testdata/testdata/Miseq_PairedEnd/samplesheet.csv --outdir result -with-report51ae67c7a1786a7937e7c520871990bde0b4cec2-cbfd-47c6-b4f8-bd0494c5c17aThese plots give an overview of the distribution of resource usage for each process.
This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.